HL_7NWI_052

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_052 not in the Motif Atlas

Homologous match to HL_5TBW_048

Geometric discrepancy: 0.17

The information below is about HL_5TBW_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7NWI|1|5|A|3724
7NWI|1|5|G|3725
7NWI|1|5|A|3726
7NWI|1|5|A|3727
7NWI|1|5|A|3728
7NWI|1|5|U|3729

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain i

60S ribosomal protein L36

Chain o

LOW QUALITY PROTEIN: 60S ribosomal protein L36a