HL_7NWI_054

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AUCUAAUUAGU

Length

11 nucleotides

Bulged bases

7NWI|1|5|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWI|1|5|A|3795
7NWI|1|5|U|3796
7NWI|1|5|C|3797
7NWI|1|5|U|3798
7NWI|1|5|A|3799
7NWI|1|5|A|3800
7NWI|1|5|U|3801
7NWI|1|5|U|3802
7NWI|1|5|A|3803
7NWI|1|5|G|3804
7NWI|1|5|U|3805

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain V

eL14