HL_7NWI_055

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7NWI|1|5|A|3876, 7NWI|1|5|A|3877, 7NWI|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_055 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.1674

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7NWI|1|5|G|3873
7NWI|1|5|G|3874
7NWI|1|5|G|3875
7NWI|1|5|A|3876
7NWI|1|5|A|3877
7NWI|1|5|C|3878
7NWI|1|5|G|3879
7NWI|1|5|G|3880
7NWI|1|5|G|3881
7NWI|1|5|C|3882

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain B

uL3

Chain e

eL32