HL_7NWI_058

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GCGCGCC

Length

7 nucleotides

Bulged bases

7NWI|1|5|C|4144

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_058 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2044

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7NWI|1|5|G|4139
7NWI|1|5|C|4140
7NWI|1|5|G|4141
7NWI|1|5|C|4142
7NWI|1|5|G|4143
7NWI|1|5|C|4144
7NWI|1|5|C|4145

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains