HL_7NWI_061

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_061 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1869

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7NWI|1|5|G|4250
7NWI|1|5|A|4251
7NWI|1|5|C|4252
7NWI|1|5|A|4253
7NWI|1|5|G|4254
7NWI|1|5|A|4255
7NWI|1|5|A|4256
7NWI|1|5|A|4257
7NWI|1|5|C|4258

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain J

Ribosomal protein L11