HL_7NWI_062

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_062 not in the Motif Atlas

Homologous match to HL_8C3A_058

Geometric discrepancy: 0.1822

The information below is about HL_8C3A_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

7NWI|1|5|C|4270
7NWI|1|5|A|4271
7NWI|1|5|G|4272
7NWI|1|5|A|4273
7NWI|1|5|A|4274
7NWI|1|5|G|4275
7NWI|1|5|G|4276
7NWI|1|5|G|4277

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain I

60S ribosomal protein L10

Chain T

eL21