HL_7NWI_074

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

7NWI|1|5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_074 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1286

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7NWI|1|5|G|4975
7NWI|1|5|U|4976
7NWI|1|5|A|4977
7NWI|1|5|G|4978
7NWI|1|5|A|4979
7NWI|1|5|C|4980
7NWI|1|5|G|4981
7NWI|1|5|A|4982
7NWI|1|5|C|4983

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain B

uL3

Chain P

L17