HL_7NWI_075

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

7NWI|1|5|C|5027

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_075 not in the Motif Atlas

Homologous match to HL_9H3G_072

Geometric discrepancy: 0.5436

The information below is about HL_9H3G_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36488.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7NWI|1|5|C|5021
7NWI|1|5|U|5022
7NWI|1|5|C|5023
7NWI|1|5|C|5024
7NWI|1|5|C|5025
7NWI|1|5|U|5026
7NWI|1|5|C|5027
7NWI|1|5|G|5028

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain II

40S ribosomal protein S8

Chain U

60S ribosomal protein L22