HL_7NWI_086

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

7NWI|1|9|G|291, 7NWI|1|9|A|292, 7NWI|1|9|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_086 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.359

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7NWI|1|9|G|288
7NWI|1|9|G|289
7NWI|1|9|U|290
7NWI|1|9|G|291
7NWI|1|9|A|292
7NWI|1|9|C|293
7NWI|1|9|U|294
7NWI|1|9|C|295

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

S4

Chain GG

40S ribosomal protein S6

Chain LL

40S ribosomal protein S11