HL_7NWI_094

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_094 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1788

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7NWI|1|9|A|569
7NWI|1|9|C|570
7NWI|1|9|U|571
7NWI|1|9|U|572
7NWI|1|9|U|573
7NWI|1|9|A|574
7NWI|1|9|A|575
7NWI|1|9|A|576
7NWI|1|9|U|577
7NWI|1|9|C|578
7NWI|1|9|C|579
7NWI|1|9|U|580
7NWI|1|9|U|581

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain JJ

40S ribosomal protein S9

Chain YY

40S ribosomal protein S24