HL_7NWI_098
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- UGUUCAAAG
- Length
- 9 nucleotides
- Bulged bases
- 7NWI|1|9|G|821
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NWI_098 not in the Motif Atlas
- Homologous match to HL_4V88_203
- Geometric discrepancy: 0.1696
- The information below is about HL_4V88_203
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
7NWI|1|9|U|820
7NWI|1|9|G|821
7NWI|1|9|U|822
7NWI|1|9|U|823
7NWI|1|9|C|824
7NWI|1|9|A|825
7NWI|1|9|A|826
7NWI|1|9|A|827
7NWI|1|9|G|828
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain EE
- S4
- Chain JJ
- 40S ribosomal protein S9
- Chain YY
- 40S ribosomal protein S24
Coloring options: