HL_7NWI_104

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

UUAUUCCCAUGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_104 not in the Motif Atlas

Geometric match to HL_7VTI_001

Geometric discrepancy: 0.2693

The information below is about HL_7VTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

7NWI|1|9|U|1111
7NWI|1|9|U|1112
7NWI|1|9|A|1113
7NWI|1|9|U|1114
7NWI|1|9|U|1115
7NWI|1|9|C|1116
7NWI|1|9|C|1117
7NWI|1|9|C|1118
7NWI|1|9|A|1119
7NWI|1|9|U|1120
7NWI|1|9|G|1121
7NWI|1|9|A|1122

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain BB

40S ribosomal protein S3a

Chain RR

S17

Chain bb

40S ribosomal protein S27