HL_7NWI_111

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AGCGGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_111 not in the Motif Atlas

Geometric match to HL_5FQ5_003

Geometric discrepancy: 0.3888

The information below is about HL_5FQ5_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7NWI|1|9|A|1421
7NWI|1|9|G|1422
7NWI|1|9|C|1423
7NWI|1|9|G|1424
7NWI|1|9|G|1425
7NWI|1|9|U|1426

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain QQ

Rps16 protein

Chain TT

S19