HL_7NWI_112

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_112 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.4063

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

7NWI|1|9|C|1460
7NWI|1|9|G|1461
7NWI|1|9|U|1462
7NWI|1|9|U|1463
7NWI|1|9|C|1464
7NWI|1|9|A|1465
7NWI|1|9|G|1466

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain RR

S17