HL_7NWI_113

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_113 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.2774

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7NWI|1|9|C|1565
7NWI|1|9|G|1566
7NWI|1|9|G|1567
7NWI|1|9|C|1568
7NWI|1|9|A|1569
7NWI|1|9|G|1570

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain PP

40S ribosomal protein uS19

Chain SS

ribosomal protein uS13

Chain TT

S19