HL_7NWI_114

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GAUUGCAAUUAUUC

Length

14 nucleotides

Bulged bases

7NWI|1|9|U|1621, 7NWI|1|9|U|1622, 7NWI|1|9|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWI|1|9|G|1613
7NWI|1|9|A|1614
7NWI|1|9|U|1615
7NWI|1|9|U|1616
7NWI|1|9|G|1617
7NWI|1|9|C|1618
7NWI|1|9|A|1619
7NWI|1|9|A|1620
7NWI|1|9|U|1621
7NWI|1|9|U|1622
7NWI|1|9|A|1623
7NWI|1|9|U|1624
7NWI|1|9|U|1625
7NWI|1|9|C|1626

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain PP

40S ribosomal protein uS19

Chain SS

ribosomal protein uS13

Chain TT

S19

Chain dd

ribosomal protein uS14