HL_7NWT_035

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

7NWT|1|1|U|1396, 7NWT|1|1|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWT_035 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.0844

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7NWT|1|1|G|1389
7NWT|1|1|U|1390
7NWT|1|1|U|1391
7NWT|1|1|A|1392
7NWT|1|1|A|1393
7NWT|1|1|U|1394
7NWT|1|1|A|1395
7NWT|1|1|U|1396
7NWT|1|1|U|1397
7NWT|1|1|C|1398

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23