HL_7NWT_097

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWT_097 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.0699

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7NWT|1|2|C|1314
7NWT|1|2|U|1315
7NWT|1|2|G|1316
7NWT|1|2|C|1317
7NWT|1|2|A|1318
7NWT|1|2|A|1319
7NWT|1|2|C|1320
7NWT|1|2|U|1321
7NWT|1|2|C|1322
7NWT|1|2|G|1323

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain r

30S ribosomal protein S13

Chain s

30S ribosomal protein S14

Chain x

30S ribosomal protein S19