HL_7NWT_105

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

G(5MU)(PSU)CAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWT_105 not in the Motif Atlas

Homologous match to HL_5L4O_003

Geometric discrepancy: 0.1199

The information below is about HL_5L4O_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7NWT|1|5|G|53
7NWT|1|5|5MU|54
7NWT|1|5|PSU|55
7NWT|1|5|C|56
7NWT|1|5|A|57
7NWT|1|5|A|58
7NWT|1|5|A|59
7NWT|1|5|U|60
7NWT|1|5|C|61

Current chains

Chain 5

fMet-NH-tRNA(fMet)

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain E

50S ribosomal protein L5

Chain M

50S ribosomal protein L16