HL_7NWW_103

3D structure

PDB id

7NWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGAGU(OMG)GCUGAAG

Length

13 nucleotides

Bulged bases

7NWW|1|z|U|16, 7NWW|1|z|G|18, 7NWW|1|z|C|19, 7NWW|1|z|G|21

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWW_103 not in the Motif Atlas

Homologous match to HL_1H3E_001

Geometric discrepancy: 0.5092

The information below is about HL_1H3E_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWW|1|z|C|12
7NWW|1|z|G|13
7NWW|1|z|A|14
7NWW|1|z|G|15
7NWW|1|z|U|16
7NWW|1|z|OMG|17
7NWW|1|z|G|18
7NWW|1|z|C|19
7NWW|1|z|U|20
7NWW|1|z|G|21
7NWW|1|z|A|22
7NWW|1|z|A|23
7NWW|1|z|G|24

Current chains

Chain z

tRNA-Ser

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain F

50S ribosomal protein L5