HL_7O5B_012

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

7O5B|1|A|U|476

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_012 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3363

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7O5B|1|A|C|472
7O5B|1|A|G|473
7O5B|1|A|A|474
7O5B|1|A|A|475
7O5B|1|A|U|476
7O5B|1|A|A|477
7O5B|1|A|G|478

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains