HL_7O5B_026

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AUUCAGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_026 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2314

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7O5B|1|A|A|1143
7O5B|1|A|U|1144
7O5B|1|A|U|1145
7O5B|1|A|C|1146
7O5B|1|A|A|1147
7O5B|1|A|G|1148
7O5B|1|A|U|1149
7O5B|1|A|U|1150

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains