HL_7O5B_027

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UGACAAA

Length

7 nucleotides

Bulged bases

7O5B|1|A|A|1176, 7O5B|1|A|C|1177

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_027 not in the Motif Atlas

Geometric match to HL_3IGI_004

Geometric discrepancy: 0.3105

The information below is about HL_3IGI_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

7O5B|1|A|U|1174
7O5B|1|A|G|1175
7O5B|1|A|A|1176
7O5B|1|A|C|1177
7O5B|1|A|A|1178
7O5B|1|A|A|1179
7O5B|1|A|A|1180

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain B

30S ribosomal protein S2