HL_7O5B_032

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_032 not in the Motif Atlas

Homologous match to HL_6CZR_103

Geometric discrepancy: 0.1018

The information below is about HL_6CZR_103

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7O5B|1|A|C|1525
7O5B|1|A|G|1526
7O5B|1|A|G|1527
7O5B|1|A|A|1528
7O5B|1|A|A|1529
7O5B|1|A|G|1530

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain X

Large subunit ribosomal RNA; LSU rRNA