HL_7O5B_037

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CAAUCCGCUCUAG

Length

13 nucleotides

Bulged bases

7O5B|1|W|U|45, 7O5B|1|W|C|51, 7O5B|1|W|A|53

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_037 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.2977

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7O5B|1|W|C|42
7O5B|1|W|A|43
7O5B|1|W|A|44
7O5B|1|W|U|45
7O5B|1|W|C|46
7O5B|1|W|C|47
7O5B|1|W|G|48
7O5B|1|W|C|49
7O5B|1|W|U|50
7O5B|1|W|C|51
7O5B|1|W|U|52
7O5B|1|W|A|53
7O5B|1|W|G|54

Current chains

Chain W

SRP RNA (266-MER)

Nearby chains

Chain X

Large subunit ribosomal RNA; LSU rRNA

Chain d

50S ribosomal protein L6

Chain q

50S ribosomal protein L11