HL_7O5B_045

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CAAAUG

Length

6 nucleotides

Bulged bases

7O5B|1|X|U|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_045 not in the Motif Atlas

Homologous match to HL_7A0S_007

Geometric discrepancy: 0.2402

The information below is about HL_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91813.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

24

Unit IDs

7O5B|1|X|C|228
7O5B|1|X|A|229
7O5B|1|X|A|230
7O5B|1|X|A|231
7O5B|1|X|U|232
7O5B|1|X|G|233

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains