HL_7O5B_048

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

7O5B|1|X|A|355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_048 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1569

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

7O5B|1|X|C|349
7O5B|1|X|U|350
7O5B|1|X|G|351
7O5B|1|X|G|352
7O5B|1|X|A|353
7O5B|1|X|A|354
7O5B|1|X|A|355
7O5B|1|X|G|356

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain t

50S ribosomal protein L24