HL_7O5B_054

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_054 not in the Motif Atlas

Homologous match to HL_4WF9_016

Geometric discrepancy: 0.0998

The information below is about HL_4WF9_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

7O5B|1|X|C|534
7O5B|1|X|G|535
7O5B|1|X|G|536
7O5B|1|X|A|537
7O5B|1|X|A|538
7O5B|1|X|G|539

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain g

Signal recognition particle protein

Chain r

50S ribosomal protein L22