HL_7O5B_055

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGUUAACG

Length

8 nucleotides

Bulged bases

7O5B|1|X|U|591, 7O5B|1|X|C|594

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_055 not in the Motif Atlas

Homologous match to HL_4WF9_017

Geometric discrepancy: 0.1892

The information below is about HL_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50318.1

Basepair signature

cWW-cSH-F-F

Number of instances in this motif group

1

Unit IDs

7O5B|1|X|C|588
7O5B|1|X|G|589
7O5B|1|X|U|590
7O5B|1|X|U|591
7O5B|1|X|A|592
7O5B|1|X|A|593
7O5B|1|X|C|594
7O5B|1|X|G|595

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain e

50S ribosomal protein L13

Chain o

50S ribosomal protein L21