HL_7O5B_057

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AGAAGAU

Length

7 nucleotides

Bulged bases

7O5B|1|X|A|659

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_057 not in the Motif Atlas

Geometric match to HL_5J7L_026

Geometric discrepancy: 0.1855

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7O5B|1|X|A|656
7O5B|1|X|G|657
7O5B|1|X|A|658
7O5B|1|X|A|659
7O5B|1|X|G|660
7O5B|1|X|A|661
7O5B|1|X|U|662

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain b

50S ribosomal protein L4