HL_7O5B_059

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UGAAUAG

Length

7 nucleotides

Bulged bases

7O5B|1|X|U|691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_059 not in the Motif Atlas

Homologous match to HL_7RQB_021

Geometric discrepancy: 0.1754

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

7O5B|1|X|U|687
7O5B|1|X|G|688
7O5B|1|X|A|689
7O5B|1|X|A|690
7O5B|1|X|U|691
7O5B|1|X|A|692
7O5B|1|X|G|693

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain 1

50S ribosomal protein L33 1

Chain 3

50S ribosomal protein L35

Chain i

50S ribosomal protein L15