HL_7O5B_064

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUACCG

Length

6 nucleotides

Bulged bases

7O5B|1|X|U|934, 7O5B|1|X|A|935, 7O5B|1|X|C|936

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_064 not in the Motif Atlas

Geometric match to HL_4TUW_002

Geometric discrepancy: 0.2982

The information below is about HL_4TUW_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

7O5B|1|X|C|933
7O5B|1|X|U|934
7O5B|1|X|A|935
7O5B|1|X|C|936
7O5B|1|X|C|937
7O5B|1|X|G|938

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain M

30S ribosomal protein S13

Chain S

30S ribosomal protein S19