HL_7O5B_070

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_070 not in the Motif Atlas

Homologous match to HL_7A0S_031

Geometric discrepancy: 0.1093

The information below is about HL_7A0S_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

7O5B|1|X|C|1262
7O5B|1|X|G|1263
7O5B|1|X|G|1264
7O5B|1|X|A|1265
7O5B|1|X|A|1266
7O5B|1|X|G|1267

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain i

50S ribosomal protein L15

Chain n

50S ribosomal protein L20

Chain o

50S ribosomal protein L21