HL_7O5B_072

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

7O5B|1|X|C|1364, 7O5B|1|X|U|1368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_072 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.1245

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

7O5B|1|X|G|1363
7O5B|1|X|C|1364
7O5B|1|X|U|1365
7O5B|1|X|C|1366
7O5B|1|X|G|1367
7O5B|1|X|U|1368
7O5B|1|X|C|1369

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain k

50S ribosomal protein L17

Chain r

50S ribosomal protein L22