HL_7O5B_074

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

7O5B|1|X|U|1435, 7O5B|1|X|U|1436

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_074 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.1508

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7O5B|1|X|G|1428
7O5B|1|X|U|1429
7O5B|1|X|U|1430
7O5B|1|X|G|1431
7O5B|1|X|A|1432
7O5B|1|X|U|1433
7O5B|1|X|A|1434
7O5B|1|X|U|1435
7O5B|1|X|U|1436
7O5B|1|X|C|1437

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain s

50S ribosomal protein L23