HL_7O5B_077

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CAAG

Length

4 nucleotides

Bulged bases

7O5B|1|X|A|1614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_077 not in the Motif Atlas

Homologous match to HL_7A0S_039

Geometric discrepancy: 0.1501

The information below is about HL_7A0S_039

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.4

Basepair signature

cWW-F

Number of instances in this motif group

48

Unit IDs

7O5B|1|X|C|1613
7O5B|1|X|A|1614
7O5B|1|X|A|1615
7O5B|1|X|G|1616

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain Z

50S ribosomal protein L2