HL_7O5B_087

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

7O5B|1|X|U|1984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_087 not in the Motif Atlas

Homologous match to HL_4WF9_046

Geometric discrepancy: 0.1439

The information below is about HL_4WF9_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33350.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7O5B|1|X|G|1978
7O5B|1|X|G|1979
7O5B|1|X|U|1980
7O5B|1|X|A|1981
7O5B|1|X|A|1982
7O5B|1|X|G|1983
7O5B|1|X|U|1984
7O5B|1|X|U|1985
7O5B|1|X|C|1986

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain f

50S ribosomal protein L14