HL_7O5B_088

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

7O5B|1|X|A|2059, 7O5B|1|X|A|2060, 7O5B|1|X|G|2061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_088 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.131

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

7O5B|1|X|G|2056
7O5B|1|X|U|2057
7O5B|1|X|G|2058
7O5B|1|X|A|2059
7O5B|1|X|A|2060
7O5B|1|X|G|2061
7O5B|1|X|A|2062
7O5B|1|X|U|2063
7O5B|1|X|G|2064
7O5B|1|X|C|2065

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain 0

50S ribosomal protein L32

Chain a

50S ribosomal protein L3

Chain o

50S ribosomal protein L21