HL_7O5B_091

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7O5B|1|X|G|2279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_091 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1451

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

7O5B|1|X|C|2277
7O5B|1|X|U|2278
7O5B|1|X|G|2279
7O5B|1|X|G|2280
7O5B|1|X|G|2281
7O5B|1|X|G|2282
7O5B|1|X|C|2283
7O5B|1|X|G|2284
7O5B|1|X|G|2285

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain U

Transfer RNA; tRNA

Chain j

50S ribosomal protein L16

Chain u

50S ribosomal protein L27