HL_7O5B_092

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

7O5B|1|X|A|2297, 7O5B|1|X|C|2304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_092 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.0988

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

7O5B|1|X|C|2293
7O5B|1|X|U|2294
7O5B|1|X|A|2295
7O5B|1|X|A|2296
7O5B|1|X|A|2297
7O5B|1|X|A|2298
7O5B|1|X|G|2299
7O5B|1|X|G|2300
7O5B|1|X|U|2301
7O5B|1|X|A|2302
7O5B|1|X|A|2303
7O5B|1|X|C|2304
7O5B|1|X|G|2305

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain j

50S ribosomal protein L16

Chain u

50S ribosomal protein L27