HL_7O5B_093

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGUUGGAAAUC

Length

11 nucleotides

Bulged bases

7O5B|1|X|U|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_093 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.4132

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7O5B|1|X|G|2332
7O5B|1|X|G|2333
7O5B|1|X|U|2334
7O5B|1|X|U|2335
7O5B|1|X|G|2336
7O5B|1|X|G|2337
7O5B|1|X|A|2338
7O5B|1|X|A|2339
7O5B|1|X|A|2340
7O5B|1|X|U|2341
7O5B|1|X|C|2342

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain c

50S ribosomal protein L5