HL_7O5B_095

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCUACAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_095 not in the Motif Atlas

Homologous match to HL_4WF9_053

Geometric discrepancy: 0.1754

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7O5B|1|X|C|2384
7O5B|1|X|C|2385
7O5B|1|X|U|2386
7O5B|1|X|A|2387
7O5B|1|X|C|2388
7O5B|1|X|A|2389
7O5B|1|X|A|2390
7O5B|1|X|G|2391

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain 3

50S ribosomal protein L35

Chain i

50S ribosomal protein L15

Chain u

50S ribosomal protein L27