HL_7O5B_097

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

7O5B|1|X|C|2435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_097 not in the Motif Atlas

Homologous match to HL_4WF9_055

Geometric discrepancy: 0.1182

The information below is about HL_4WF9_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7O5B|1|X|C|2433
7O5B|1|X|G|2434
7O5B|1|X|C|2435
7O5B|1|X|A|2436
7O5B|1|X|U|2437
7O5B|1|X|G|2438
7O5B|1|X|G|2439
7O5B|1|X|A|2440
7O5B|1|X|A|2441
7O5B|1|X|G|2442

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain i

50S ribosomal protein L15