HL_7O5B_099

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UGUAGUCG

Length

8 nucleotides

Bulged bases

7O5B|1|X|G|2558, 7O5B|1|X|A|2560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_099 not in the Motif Atlas

Homologous match to HL_4WF9_057

Geometric discrepancy: 0.5723

The information below is about HL_4WF9_057

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7O5B|1|X|U|2557
7O5B|1|X|G|2558
7O5B|1|X|U|2559
7O5B|1|X|A|2560
7O5B|1|X|G|2561
7O5B|1|X|U|2562
7O5B|1|X|C|2563
7O5B|1|X|G|2564

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain 4

50S ribosomal protein L36

Chain W

Large signal recognition particle RNA; LSRP RNA

Chain d

50S ribosomal protein L6