HL_7O5B_102

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_102 not in the Motif Atlas

Homologous match to HL_7A0S_063

Geometric discrepancy: 0.5037

The information below is about HL_7A0S_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

7O5B|1|X|C|2687
7O5B|1|X|G|2688
7O5B|1|X|A|2689
7O5B|1|X|G|2690
7O5B|1|X|A|2691
7O5B|1|X|G|2692

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain W

Large signal recognition particle RNA; LSRP RNA

Chain d

50S ribosomal protein L6