HL_7O5B_104

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7O5B|1|X|G|2780, 7O5B|1|X|C|2784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_104 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1465

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.3

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

7O5B|1|X|C|2774
7O5B|1|X|U|2775
7O5B|1|X|G|2776
7O5B|1|X|A|2777
7O5B|1|X|A|2778
7O5B|1|X|A|2779
7O5B|1|X|G|2780
7O5B|1|X|C|2781
7O5B|1|X|A|2782
7O5B|1|X|U|2783
7O5B|1|X|C|2784
7O5B|1|X|U|2785
7O5B|1|X|A|2786
7O5B|1|X|A|2787
7O5B|1|X|G|2788

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain 4

50S ribosomal protein L36

Chain d

50S ribosomal protein L6

Chain e

50S ribosomal protein L13