HL_7O5B_106

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AAAGAUGAU

Length

9 nucleotides

Bulged bases

7O5B|1|X|A|2845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_106 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.121

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7O5B|1|X|A|2844
7O5B|1|X|A|2845
7O5B|1|X|A|2846
7O5B|1|X|G|2847
7O5B|1|X|A|2848
7O5B|1|X|U|2849
7O5B|1|X|G|2850
7O5B|1|X|A|2851
7O5B|1|X|U|2852

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain a

50S ribosomal protein L3

Chain k

50S ribosomal protein L17