HL_7O5H_021

3D structure

PDB id

7O5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal methyltransferase KsgA bound to small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

7O5H|1|A|G|1516, 7O5H|1|A|G|1517, 7O5H|1|A|A|1519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5H_021 not in the Motif Atlas

Homologous match to HL_4LFB_032

Geometric discrepancy: 0.5534

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7O5H|1|A|G|1515
7O5H|1|A|G|1516
7O5H|1|A|G|1517
7O5H|1|A|A|1518
7O5H|1|A|A|1519
7O5H|1|A|C|1520

Current chains

Chain A

16S rRNA

Nearby chains

Chain V

Ribosomal RNA small subunit methyltransferase A