HL_7O7Y_010

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAU(OMC)CAAGG(A2M)AG

Length

12 nucleotides

Bulged bases

7O7Y|1|A2|A|465

QA status

Modified nucleotides: OMC, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Y|1|A2|C|460
7O7Y|1|A2|A|461
7O7Y|1|A2|U|462
7O7Y|1|A2|OMC|463
7O7Y|1|A2|C|464
7O7Y|1|A2|A|465
7O7Y|1|A2|A|466
7O7Y|1|A2|G|467
7O7Y|1|A2|G|468
7O7Y|1|A2|A2M|469
7O7Y|1|A2|A|470
7O7Y|1|A2|G|471

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain Ax

40S ribosomal protein S24

Chain BV

Ribosomal protein L23