HL_7O7Y_013
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- ACU(PSU)UAA(A2M)UCCUU
- Length
- 13 nucleotides
- Bulged bases
- 7O7Y|1|A2|U|574
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O7Y_013 not in the Motif Atlas
- Homologous match to HL_4V88_199
- Geometric discrepancy: 0.2217
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7O7Y|1|A2|A|570
7O7Y|1|A2|C|571
7O7Y|1|A2|U|572
7O7Y|1|A2|PSU|573
7O7Y|1|A2|U|574
7O7Y|1|A2|A|575
7O7Y|1|A2|A|576
7O7Y|1|A2|A2M|577
7O7Y|1|A2|U|578
7O7Y|1|A2|C|579
7O7Y|1|A2|C|580
7O7Y|1|A2|U|581
7O7Y|1|A2|U|582
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ad
- Ribosomal protein eS4
- Chain Ai
- Ribosomal protein S9 (Predicted)
- Chain Ax
- 40S ribosomal protein S24
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